PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041657m
Common NameCISIN_1g041657mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 287aa    MW: 32189.2 Da    PI: 7.3659
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041657mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.98.8e-12169225155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  orange1.1g041657m 169 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 225
                        57*******************5444.2455536655.779999**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-19169234No hitNo description
SuperFamilySSF541715.17E-15169234IPR016177DNA-binding domain
PfamPF008473.5E-9169225IPR001471AP2/ERF domain
SMARTSM003801.0E-22170239IPR001471AP2/ERF domain
PROSITE profilePS5103217.504170233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-12170233IPR001471AP2/ERF domain
PRINTSPR003674.3E-5171182IPR001471AP2/ERF domain
PRINTSPR003674.3E-5215235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MNTNNWLSFP LSPTHASLPA QLHTSQSHQF NLGLVNDGMD NPFQGQEWNL INTHGSGEVP  60
KVADFLGVSK SDNQSDLVDF NEIQANDQSD YLFQNNSIVP VQNTIVAAST GTYEFQENTN  120
NLQSLTLSMG SGNNKGSSST CETSGENSTS IVEAAAPRRT LDTFGQRTSI YRGVTRHRWT  180
GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGTSTTT NFPIGNYEKE  240
LEEMKHMTRQ EFVASIRRSS SRHHQHGRWQ ARIGRVAGNK DLYLGTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446069.10.0hypothetical protein CICLE_v10014809mg
SwissprotQ5YGP71e-144PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A067FNQ90.0A0A067FNQ9_CITSI; Uncharacterized protein (Fragment)
STRINGPOPTR_0003s20470.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30152767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-132AP2 family protein